Outdoors

Arkansas soybean researchers breed for ‘plasticity’ in various environments

By JOHN LOVETT | U of A System Division of Agriculture 

FAYETTEVILLE — Development of drought-tolerant soybean varieties will increase sustainability and economics of production, but current research indicates these varieties may perform poorly in the absence of drought. Larry Purcell has his sights set on what he considers an ideal genotype — soybean varieties that can grow well in both dry and water-rich environments. 

Purcell, Distinguished Professor of crop physiology at the Arkansas Agricultural Experiment Station, the research arm of the University of Arkansas System Division of Agriculture, has collaborated with plant scientists in Mississippi, Missouri and Arizona to use a groundbreaking method of finding soybean genotypes that can adapt to both dry and wet environments. 

The focus of this research is on water use efficiency, which is a key trait when it comes to evaluating drought tolerance, but measuring it in the field is challenging, Purcell said. Water use efficiency is the ratio of photosynthesis to transpiration, or the amount of dry matter produced divided by the amount of water used in a certain time period. 

To find soybean varieties that can adapt to both environments and have what scientists call “plasticity,” the researchers measured the ratio of two isotopes of carbon — carbon-13 to carbon-12 — in a large number of soybean genotypes. Carbon-13 is a slightly heavier isotope than carbon-12, the most common form of carbon. 

“Trying to measure water use efficiency in the field is incredibly difficult,” Purcell said. “You’d need some sort of weighing mechanism in the soil looking at water loss, and then sample the plants, and that’s impossible to do on a large scale. The carbon-13 ratio is tightly associated with water use efficiency and gives us a handle on how to look at water use efficiency indirectly.” 

While a genotype that has high water use efficiency is great in a low-water environment, its productivity typically decreases in a water-rich environment. A soybean that can adapt to different environments would be favorable in areas that experience drastic swings in weather brought on by climate change, Purcell said. “This is where plasticity comes in. Our goal is to have a soybean variety that can change its water use efficiency, depending upon soil moisture availability. No farmer will want to grow a drought tolerant soybean variety if it yields poorly when there is plentiful rainfall.”   

With seeds from the U.S. Department of Agriculture’s (USDA) soybean germplasm collection, Purcell and his team have grown about 200 different soybean genotypes from Maturity Group 4 in 11 different environmental conditions, ranging from very dry to very wet. A different set of 273 genotypes were grown in four different environments. Most of the soybean varieties grown in Arkansas are in Maturity Group 4, Purcell said. The genotypes from the USDA collection are from different parts of the world and offer the genetic diversity needed for the program to breed a high-yielding variety with plasticity, Purcell noted. 

“From these large field experiments we were able to determine which genotypes always have a high water use efficiency regardless of whether it is in a drought environment or a well-watered environment,” Purcell said. “And just the opposite. We can determine which genotypes change, or are plastic, in response to that environment.” 

Purcell and colleagues found the most adaptive genotype was 55 percent more “plastic” than the average genotype. 

After four years spent determining the plasticity of the carbon-13 ratio among the 473 genotypes, Purcell said the next step was to search the USDA’s molecular marker database to associate plasticity with specific regions on the chromosomes, or DNA, of soybean. 

With the help of USDA scientists in 2010, the United Soybean Board (USB) began a process of mapping the soybean genome, identifying 50,000 different molecular markers on their entire collection of about 19,000 soybean genotypes.  

“This kind of work would’ve been impossible 20 years ago because we wouldn’t have had the molecular tools to do it. It’s foresight from soy checkoff leadership that really allowed this kind of research to take place,” he said. “The USB recognition that improving drought tolerance was critical for sustainability, and its generous funding, has made this research possible.” 

“Knowing the molecular markers associated with carbon-13 ratio plasticity allows a short cut for breeding this trait into high-yielding varieties,” Purcell said. 

“We are not using anything transgenic,” Purcell said. “Everything is moved from one variety, one genotype to another, by traditional crossing. The molecular part comes in how we can screen for it.” 

“This research has been a fantastic, collaborative project that has pulled together a group of agronomists, crop physiologists, soybean breeders, and molecular geneticists,” Purcell said. 

Researchers who have worked on the soybean plasticity project include USDA Agricultural Research Service scientists Jason Gillman at Columbia, Missouri; Rusty Smith at Stoneville, Mississippi; Jeff Ray at Stoneville, Mississippi; Hussein Abdel-Haleem at Maricopa, Arizona; and Felix Fritschi at the University of Missouri; and two postdoctoral associates with the experiment station and the University of Arkansas, Siva Chamarthi and Avjinder Kaler. 

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